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If I recall correctly, you always had to manually add new tags to the main tag list in the Python code itself. Which means you have to remember to redo that whenever you upgrade the plugin. Your "h1_changes", "h2_changes" will still be preserved in your preferences file, but you still need to go back into the plugin's Python code and add your extra tags in the taglist list after updating. This used to be near the top of the plugin.py file, but now can be found near the top of the "utilities.py code. Once you add your various h tags there, your pre-existing "h1_changes", "h2_changes", etc... should get picked up and used.
I forgot for a minute that adding tags was such a PITA (and had to be redone after upgrades). But I did take steps to make sure you could add then in one single place, and would't lose your change_prefs when updating the plugin.
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