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Thank you for the reply. I don't know about sys.path editing, but I managed to get it working another way. Instead of installing calibre via binary installer, I used my system package manager, pacman. Then I installed pudb with pip install pudb. For some reason it didn't ask for root permissions, but ok. Then I could insert breakpoints with import pudb; pu.db and it worked.
Anyways, knowing that calibre ships with it's own python gives me a clue of where to look when issues arise.
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