@NiLuJe
I did the filesystem and database checks, they both returned no errors. I then just to be safe redownloaded the zip and install script instead of using the original downloads I used. Now Koreader and Plato work fine again. Now that I think about it, initially the installation failed, then the newest version of Nickel installed itself and when I then re-did the script the errors started. But thankfully it now works again! I especially like the new NickelMenu. That way the launchers are easier to find because when I used Nickel for a while the launcher would get buried under my newly added books!
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