I get used to proceed this way with pdf in single column.
I use Acrobat to save them as rtf. If need be, I export the images.
I open a 9x12 cm template in OpenOffice and I insert the rtf. I get this way a second rtf with 9x12 cm format. I then finally export this file as a new pdf. I finally arrange the meta-data with pdf info. The result is usually pretty clean and stable. Need some work though.
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