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Before you decide on KePub instead of ePub, there are differences and ePub does much better typesetting. Give both a try and see which on you prefer. Don't just go jumping tp KePub without trying ePub. And you'll want to turn off the side visible page numbers in the Reader settings for ePub.
As for what plugins I use...
DeDRM
Kobo Utilities
Reading List
Find Duplicates
Count Pages
Diaps Editing Toolbag
EpubCheck
KePub Metadata Reader
Amazon hi-res covers
Kobo Books
KePub Metadata Writer
EpubSplit
Favorites Menu
KindleUnpack
Modify ePub
Quality Check
ScrambleEbook
KePub Output
I do have KoboTouchExtended installed but only use that rarely.
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