I'd strongly recommend just sending Epub or kepub to the device (and until the current issues with the kepub drivers are resolved, stuck with Epub only).
If the books are in Mobi format DO CONVERT THEM; yes, Kobo does "support" Mobi but it does not get a great deal of attention.
PDFs will be problematical; while Kobo does support pdf many people find the device to be quite slow in reading them.
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