@Yonder:
That's a reboot. Which is perfectly normal when installing a KoboRoot (because, guess what: it reboots the device

).
So, going to need actual details of what exactly you think is going wrong

.
The default KFMon "book" will print the tail end of the log on screen, and, more interestingly, will dump the full thing to
.adds/kfmon/log/kfmon_dump.log. Attach it here, and it should tell us exactly what's happening

.