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AFAIK you can't removing libraries from this plugins list of libraries, other than by removing them from calibre's 'master' library list.
To remove a library from calibre's 'master' library list, click the library icon's drop down arrow, select the Remove library option, and then select the library you want to remove. This remove its path from from calibre's 'master' library list, but it will not delete the library from storage.
BR
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