Generally, to debug you can start from looking at logs. You need USBNetwork to run “showlog -f > logs.txt” command from, for example, /mnt/us/ folder. However, since you say LibrarianSync does show you seconds, it means that it does it’s own job properly.
Hence, you should check whether there are changes in collections management on Kindle:
1) Collections’ structure is written to /mnt/us/system/collections.json file
2) LibrarianSync uses /var/local/cc.db database to fetch items’ ASIN and exact folders (p_location column). This is an sqlite3 database, so you can use command line or an sqlite GUI to look inside the file.
Look into LibrarianSync source code to see exactly what it tries to read.
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