Thank you.
I want to be able to check the status of different chapters of my work, cross-reference it, more easily switch between sections, and select relevant chapters for export.
I think a Wiki might make things more manageable. The traditional document approach does not-- either I try to add my notes to one working document, 200 pages, and it's hard to find the relevant sections, or I scatter them among several documents, and it's hard to find relevant sections that way too. I realize the wiki approach is designed for collaboration, but it looks like it might be better for personal research too.
I can't find anything about footnotes, endnotes, or reflists in the Fossil markdown guides:
http://www.fossil-scm.org/home/doc/t...ikitheory.wiki