@PenguinCEO
Do the following....
In the Calibre library window, Preferences > Saving Books to disk uncheck everything except Show files in the browser after saving to disk
Now in the editor, go to Tools > Preferences. In Editor settings uncheck Beautify individual files automatically when they are opened. Finally in Integration with Calibre, uncheck Update metadata embedded in the book when opening.
This way, editing in the editor won't change anything unless you change it and a save to disk will not change anything.
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