I don't actually see anything about a package getting deleted in the logs (and there is, when the update checks rejects one).
Until I see one of those, I'm assuming you're putting it in the wrong place, or the storage is failing.
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Sidebar: you're booting in diags, the FW version has no bearings on that, it's baked in at factory time. It's entirely possible you're running a far newer diags build than whatever documentation you're following, which may be pissing on your parade.
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