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As far as I know, in the editor, you cannot drag files out of the Text section. Drag and drop is allowed only within the text section. In any case if you do have html files in the miscellaneous section that means they have either incorrect mime types <manifest> in the OPF or are not in the <spine>. Correct those by editing the OPF and you should be fine. Or alternately delete and re-import.
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