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When using the Clips window QDockWidget it has focus so the code needs to guess where you want to paste into since nothing else has cursor focus at that time. So it guesses you want the main codeview window if you are currently have an html code tab (FlowTab) open there (as opposed to looking at image tabs, or content.opf, or the ncx, or audio tabs, or video tabs, or javascript, ... etc).
I can extend that guess to allow both CSSTabs and Flow(html) tabs. I will look into doing that.
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