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The only difference in the last few versions of calibre for Kobo devices is updating the supported firmware version. That was what you needed to do. Which you would have known if you had read the full details of the "error" on "version Database". Other than that, it should all be working fine. And is here with the three different Kobo devices I have plugged today.
Are you seeing any errors? Do you use the KoboTouchExtended driver? If so check that it is still installed. Sometimes, it gets an error after a calibre updated. Generally restarting calibre fixes that.
Otherwise, run calibre in debug mode, connect the device and let the device jobs run. Then close calibre and post the debug log displayed. Hopefully I will be able to see what is happening from that.
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