Yes it is fine, I still prefer the pop up notes but I also like very much In page footnotes. I think also that it depends on the notes, if they give a real additional information or a simple bibliographic reference: in the first case it is more useful, in the second pop up notes are better so You can easily ignore them.
As far as I know Koreader is the only engine that has this ingenious feature.
In my opinion this feature can be appreciated better with a large screen reader (like my Kobo Aura One), because it seems more like a printed book, also in the dimension of "page" and it leaves anyway enough space for normal text.
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