I've looked at the log, and, you haven't done the configuration properly. The log has the following line:
Code:
DEBUG: 0.0 KoboTouch:books - prefs['manage_device_metadata']= manual
That will mean that the metadata changes won't be done automatically when the device is connected. In the thread linked to above, there is a link to the Wiki page with instructions for configuring the collection management. This is
https://wiki.mobileread.com/wiki/Kob...nd_Collections. You need to do the bit under "Configuring calibre's Metadata Management options". Setting the option to automatic works best. And, the last statement in that section is:
Quote:
If the option is set to Manual management, shelves will NEVER be removed.
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