@Reader Bill
Quote:
I was hoping to be able to do this without splitting the files as there are a large number of chapters.
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Correcting the problem of not having chapters begin at the top of a page with lots of chapters is really tedious. I've done it. I now use a counter-intuitive trick that might be applied to your situation.
1) select all the files in the file browser that contain chapter content
2) right-click and select "merge selected text files"
3) after merging, right-click in that new file and follow the "split at multiple locations" wizard as theducks advised.
If I have understood your problem correctly, this will save a heap of work and all the chapters in your reader will begin where you expect them to begin.