Quote:
Originally Posted by lumpynose
Criticisms, thoughts?
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FWIW this is a 'thought'

not a 'criticism' regarding the following line of your code:
Code:
<li id="ref1">Hannibal, Missouri. (<a href="#backref1">Return to previous place.</a>)</li>
Before you put a lot of effort into coding them this way I'd be inclined to double-check whether splitting the
id="..." and
href="..." attributes across 2 different tags messes up some devices' ability to display footnotes as pop-ups. A simple first test would be to see whether the calibre Viewer pops them up properly.