Firstly, the KoboTouchExtended driver uses the KoboTouch driver for things like the collection management. If one works or fails, the other will work or fail in exactly the same way. But, they do not share the configuration. If you swap between them, you will need to keep the configuration in sync.
From what you say, it should be working with either driver. Both columns look like they can be used for collections. To see what is happening, can you run calibre in debug mode and post the debug log? Use whichever driver is the one you most want to use, but make sure the configuration is what you want. From the debug log, I can generally see what is the issue.
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