The update to 0.9.14 did not fix the problem for me, unfortunately.
The Find panel does seem to be part of the problem:
If I resize window and panels, and if the Find panel is open when I save and close the document, then upon reopening the document its window and panels revert to the default (small) sizes.
If I close the Find panel before closing the document, then upon reopening the document its window and panels keep my custom sizes.
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