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Because you had to ask if the files were moved or copied I am guessing that you cannot see for yourself if the original files are still where they were. This may be because you have forgotten or no longer have access to the original location(s).
If in doubt use Save to Disk to make a copy of your books before uninstalling calibre. Do not delete your library unless you are absolutely certain that you will not be reinstalling calibre and that you have good copies of all your books.
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