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DO not touch the Calibre created Library folder. (typically named Calibre Library, but it could be any name) or contents in any way (no renaming files) Calibre keeps track of where it put things by filename and path. you touch those and you break the linkage
Calibre ADDS book from the sources you used. Once added to Calibre, THOSE can go away (archive, move to off-line storage)
In addition:
The working Calibre Library, MUST be on local attached (SATA, USB, Firewire) storage, NOT a LAN share or NAS.
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