Here's some info that may help from the Mobipocket Developer Center...
http://www.mobipocket.com/dev/articl...hyperlinks.htm
Quote:
Hyperlinks between different ebook files
Linking to another ebook
You use the oeb:redirect special URL to link to a different ebook. The syntax is:
<a href="oeb:redirect?title=DatabaseName">External Link</a>
Where DatabaseName is the database name of the target ebook file to open. Using oeb:redirect, you do not have to know the exact location of the taget ebook on the device provided it is accessible from the library of the Mobipocket Reader.
You can specify the database name of an ebook using the <DatabaseName> entry in <x-metadata> part of the OPF publication file or use the one automatically computed by PRCGen from the book title. PRCGen displays the database name when compiling an ebook file using the following message: Info(prcgen): The document identifier is: "...."
WARNING: the database name is not the title of the document!
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Haven't had any time to mess with this yet, but standard links don't come through in a Calibre converted HTML, maybe the above mention 'special' links are what's needed.