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I also use highlights to proof books. Then I export the Notes (not the MyClippings.txt file) via the Kindle for iOS app by going to the "Notes" screen, pressing the "Export" icon and selecting "Email." It then emails me a file with all my current highlights. Highlights that have been deleted are not included. It will, however, include bookmarks, so I try to delete all bookmarks before exporting.
This only works on eink Kindles and Kindle for Mac/PC if it's a regular, non-sideloaded Kindle book, which is useless to me as all my books are sideloaded. I don't know what the situation is with Kindle for Android.
Of course, if you read and highlight on an eink Kindle, exporting Notes on iOS only works if you use WhisperSync to sync your books and highlights across devices (which I do).
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