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I understand the 'look for it'
For Count Pages, there is a Icon context menu 'Configure' that takes you to the correct place.
For the Modify EPUB you need to go to Preferences: Plugins and locate the PI
Our plugin UI has evolved, maybe a future revision will make some of the older ones UI more consistent
Interestingly My Modify has always prompted, and I never noticed the issue (but then, I commonly do other work while the modify PI grinds in background)
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