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From what I remember reading in the changelog when it was released the Python3 version (despite having a different code) is equaly supported as the Python2 version and has the exact same functionalities and results. Right?
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If you are talking about FanFicFare, yes the Python 2 and Python 3 version should be functionally equivalent.
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And since at some point I have to replace Python2 with Python3 is it worth the effort to do so now? And if I choose to wait and even not do so at all, what are your plans?
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Calibre's developer is a bit stubborn about the port to Python 3, he'd rather maintain a custom Python 2 fork himself, assuming that that is less work. FanFicFare's codebase should work with both Python 2 and 3 in stand-alone mode.