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yes the conversion_options table is where it is stored, and yes it is always stored there, regardless of whether any option is changed or not.
If you want to see which books have different options from the current defaults, you would need to write code to compare the options on a book by book basis. It should not be too hard, the options are stored as simple JSON dictionaries. You will need to exclude the metadata options such as cover, title, etc.
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