No, there is no configuration to prevent particular books appearing on the home screen. But, if you just page to the end, they will be marked as finished and never appear on the home screen. It sounds like you will have finished with them, so just finish them.
The only other thing I can think of is to add a database trigger to set the books not to appear on the home screen when opened. They will probably appear and then disappear when you open another book.
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