Also running Library Maintenance will affect ALL
My guess that you added a book with:
tags in common with the book that were changed BUT it had a different 'case', and Calibre updates the case of the tag
or
it was one of those with dozens of tags with the wrong case, so lots of books got hit
FWIW I use Title case for my tags and I wish Calibre would have a 'filter action' to do that one (it has Upper, Lower, Capitalize)
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