Thanks very much for the check library idea...it has sufficiently solved the problem. I still don't know root cause (probably that I'm storing the Library on the NAS and will continue to do so), but this solution goes through and cleans up any leftover metadata/folders/files after I'm done, which is good enough for me.
With the proliferation of data locations out there these days, it surprises me that NAS-based libraries are not supported but I'm sure there's either a really good reason for that or the developers just haven't gotten round to it yet. Either way, I'm really very thankful for all of the great feedback on this thread.
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