Calibre Companion syncs with Calibre. The way that I use it is I keep all my books in Calibre and Calibre Companion, then I send the books that I'm either in the process of reading or about to read to by reading app (Marvin in my case) via the read button in the calibre companion app. When I'm done reading, I delete it from my reading app and leave it in Calibre Companion.
Syncing last page read is done by the reading app. I have yet to see a reading app that syncs between different reading apps, you always have to have the same app on different devices. Yea, I wish that was a thing as well. I would love to sync between reading on my iPad, my Kobo eInk reader and my mac, but I know of no solution that will do that. I know that you can sync between the kindle app on your mac and the kindle app on your iPad, I assume you can do the same with iBooks, though I haven't tried it with the new books app.
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