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Asking what files Calibre can manage has multiple answers, depending upon what you mean.
If you're talking about what kinds of files Calibre can store in its database, that's theoretically infinite. Technically any file will work, but in practice, it really only works with formats where everything is stored in a single file. So it can handle images, for instance, but it can't handle an application with external libraries and settings files and entries in the Windows registry. HTML is a special case because when you import an HTML file Calibre zips up all the auxiliary files to create a single file.
The file formats that Calibre can natively read are in the Behavior section of the Preferences.
You already know the file formats that Calibre can import and export.
That should cover most of the common uses of "manage."
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