I have the same behavior with my Aura One and my Kobo sleepcover. It fully wakes when opened (from sleeping), but the first touch is not registered. I suspect this may actually be by design, so that the cover itself, which has enough flexibility that it doesn't always necessarily align perfectly and doesn't have a super strong magnet in the first place, doesn't trigger accidental touches when it's jostling around in your backpack/purse, etc.
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