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[QUOTE=No, not in the same way that Kindle books can have alternative CSS for MOBI and KF8 formats.
However, there is a trick you can use to make sure selected CSS will only be applied to kepub but not epub.
Can you give an example of what CSS you're trying to use for each?
How are you creating your kepubs? Do you use calibre to transfer books to your Kobo?[/QUOTE]
I'm editing my epub books through Calibre and then transform them as kepub. But the epub and kepub format don't act the same in my Kobo. For example, my preference is to hide the footnotes (display: hidden) in the normal reading. There is no problem to view the footnotes in .kepub since it appears in a popup window, but the epub format won't display the footnote at all.
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