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There are many thing in the db that a restore will not restore. Plugin data, book specific conversion settings, etc.
A restore is basically designed to restore only your book metadata, as that is the most precious thing. A restore should really be a last resort thing to do if you dont have backups.
And you can often recover a bad sqlite db by dumping it to sql and using the sql to re-create it, you might need to manually edit the sql a little to fix errors.
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