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Originally Posted by jackie_w
The calibre container classes, in calibre.ebooks.oeb.polish.container.py, handle the safe manipulation of epub/azw3 innards and can also be used for kepubs.
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Thanks. Added to the top of my list.
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These classes don't handle PDF and I know almost nothing about PDF editing.
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Right now, I'm using a command line tool to do the PDF heavy lifting, what I've written just massages the metadata to make it sanely editable with a regular editor. I know I'll have to do it differently if I integrate with calibre.
I'm sure the pdf tools aren't too far from there.