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MyClippings is just a simple (event) log file that Kindle eInk device creates or appends more "text" to it: each time you highlight some text (or add a note, or create a bookmark) in a book that text gets added to the end of MyClippings along with extra info such as book title, location in the book and time created. So no, you can't "sync to MyClippings" something that you did on other device (such as Kindle Fire).
The official ways of keeping two Kindle devices (or device + Kindle app) in sync works by getting/sending info from/to Amazon servers and storing it locally in "sidecar" file (for old mobi format the extension of that file was .mbp). Those files keep permanent record of your notes, MyClippings is temporary storage..... if you delete it completely Kindle will not recreate new one that would contain all previous notes but it would start from fresh, empty MyClippings file which then gets filled up as you create NEW notes.
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