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Firstly, I had a vague feeling my statement about KFX was wrong, but couldn't see how they were being handled. I have since found out how, and the attached beta should pick them up. Plus, for the other formats, I have changed to another method that should be better over all. And one extra bit of debug output that should tell me what goes wrong.
For the rest, I'm not to surprised by any of that. As KFX books have to be handled differently, they won't have been handled by any previous version of the plugin. For the MOBI/AZW3 swaps, there are things going on with UUIDs in the files that probably explain it.
But, I really need to see the debug log. It has information about what the plugin thinks is on the device. What files it sees and what titles it thinks these files have. And I can map that back to the code to work out what is happening. And the complete clippings file will help. As I don't have a Kindle of any sort, I am hamstrung about testing the code. If there is a problem posting this in the thread, then send it in a PM, or upload it somewhere and PM the link. Or send an email to the address in the code.
The attached beta should get closer to either getting all the annotations or telling me why they aren't retrieved. This has all been work on code in the Kindle part of the plugin. But, until I know all the annotations are read from the file and the plugin has done it's first pass of matching them to books.
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