Have a look in you library on the Kobo web site. I believe the library books should show there. The desktop app or the Android or iOS should also download the books.
You could also try the "Repair" option on the Device information page of the settings. This was added because of situations like this. Something had gone wrong and books weren't downloading. It triggers a re-download of all the books from Kobo, make sure you have some time when you do it.
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