Thanks. I can't persuade Calibre to accept 01.03. It changes it to 1.03 - which would be ok except the series is arranged into part1 (episodes 1 - 15) followed by part 2 (episodes 1 - ??)! I guess a simple bodge would be to append the part number (1,2 etc) on the end of the series title (The Frontiers Saga): The Frontiers Saga part 'n', and then run epubsplit to divide-up the omnibus ebooks?
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