I too would like to have an option as to how Calibre organizes my collection, personally I'd like to group by Fiction/non-Fiction. If fiction I'd like it to be organized by author and under author directory I'd just like the individual books - broken down in sub-directories by series if it's a series book.
Non-Fiction I'd like broken down by subject which presumably I would put in as a tag.
Related topic, is there a way to turn off the (#) is added to the directory name in the current structure?
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