Not really sure what I can do to fix it. Either one has identification based on the internal name in the plugin zip file or one has indentification based on the name in the plugin index thread.
Since renaming plugins and having them still be auto-updated is a relatively rare event, while plugin authors using different names in the plugin index and in the zip file is more common, I am inclined to optimize for the latter. I am not aware of any recent plugins that were renamed while I am aware of three recent plugins that sufferened from the name mismatch issue.
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