@Lemmy:
I'm assuming that you're working on an epub3 book and that the problem occurs with Kindles or Kindle apps.
If that's the case, make sure that you've assigned the proper semantics via Add Semantics...:
Bodymatter (Text in epub2 books) => SRL (Start Reading Location)
TOC => HTML Table of Contents (not the NAV)
Make sure that you have a reference type="toc" guide item in the .opf file and an epub:type="toc" landmarks item in the nav file.
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