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The modifications to the stock bs4 are documented in the sigil_custom_changes_to_bs4-4.4.0.patch.txt file in the sigil_bs4 folder in the plugin_launchers/python directory. Should be able to ge found in Sigil's Program Files directory after installation (or the Resource_Files directory in Sigil's source).
To my knowledge, the changes are minimal and should not be causing your issue.
You're positive the testplugin gives your installation a clean bill of heath RE sigil_bs4 and gumbo (with the Use Bundled Python option checked)?
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