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I don't use calibre myself for organizing my ebooks, but it doesn't look like anyone else will answer, so I will give it a try. I updated calibre and plugged in my Inkpad. The device was detected in calibre, and the internal drive and the SD card were both searched. I didn't see anything that specifically referred to the notes for the books. The notes did show up, but so did every other file on the internal drive. I'm not sure what else to say. Maybe someone more experienced with calibre can add some more details.
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