Alas my tinkering has come to naught. Though given my general lack of knowledge with sqlite I'm not terribly surprised.
I'd noticed that the OverDrive Library cards table retained entries for my two libraries, NYPL and BPL. It was the other OD table that only had one of the two. So I tried adding the other to it using the information from a database with the missing one. No go. Still only shows one library in the OD settings.
But perhaps someone with more experience here can do something I wasn't able to.
In the meantime, I would suggest everyone who is affected by this open tickets with Kobo. Sade said she would pass along the request for the feature, but I'm sure the more requests they get the more likely things will change.
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