In this specific case I would not recommend an ePUB of Kindle e-book to be honest, but to stick with PDF.
For a book that you envision, a fixed-layout would be best. However, not only are they more difficult to make, they are also strongly restricted to the device for which they were designed and the support for fixed-layout is mediocre at best. Only a few devices support fixed layout.
Now, most devices support PDF in a sort of way (some better than others) and it will allow you to form it as you see fit. Although I am not a big fan of PDF for e-books, for this particular format I would recommend it.
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