If you update your T1 to the last release, it actually updates the reader from the Sony store to Kobo so you can access Kobo books on your device directly.
Also, nothing needs to be set up in Calibre. It should recognize whatever device is hooked up to the computer. I regularly hook up my Sonys to my laptop and Calibre recognized them all--T1, T2, T3 and the PRS 900.
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