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I actually ended up using a bit of both solutions found on this thread.
I used the partition tool pointed to in message 46 but then I basically followed DNSB's steps. The only difference was that, after formatting, I unplugged the kobo and went through the steps to set it up again (choosing english and connecting it with kobo desktop to reload the dictionaries, etc.). After that I was able to go to the non-Anniversary machine and upload the backup to the kobo again without a problem. The only issue was that almost anytime it asked me if I wanted to over-right a file from the backup onto the kobo I chose no, and kept the files that kobo desktop had just uploaded from setup.
I hope that helps!
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